PEX1

Chr 7AR

peroxisomal biogenesis factor 1

Also known as: HMLR1, PBD1A, PBD1B, ZWS, ZWS1

This gene encodes a member of the AAA ATPase family, a large group of ATPases associated with diverse cellular activities. This protein is cytoplasmic but is often anchored to a peroxisomal membrane where it forms a heteromeric complex and plays a role in the import of proteins into peroxisomes and peroxisome biogenesis. Mutations in this gene have been associated with complementation group 1 peroxisomal disorders such as neonatal adrenoleukodystrophy, infantile Refsum disease, and Zellweger syndrome. Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Sep 2013]

GeneReviewsOMIMResearchGenerating clinical summary…
LOFmechanismARLOEUF 0.663 OMIM phenotypes
Clinical SummaryPEX1
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Gene-Disease Validity (ClinGen)
peroxisome biogenesis disorder due to PEX1 defect · ARDefinitive

Definitive — sufficient evidence for diagnostic panels

Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.
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Clinical Trials
3 active or recruiting trials — potential therapeutic options may be available
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GeneReview available — PEX1
Authoritative clinical overview · Recommended first read
Open GeneReview ↗

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.66LOEUF
pLI 0.000
Z-score 3.86
OE 0.50 (0.380.66)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
1.14Z-score
OE missense 0.88 (0.820.94)
582 obs / 664.4 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.50 (0.380.66)
00.351.4
Missense OE?0.88 (0.820.94)
00.61.4
Synonymous OE?0.92
01.21.6
LoF obs/exp: 35 / 69.8Missense obs/exp: 582 / 664.4Syn Z: 0.96
Curated Mechanism (G2P)Gene2Phenotype (DDG2P) ↗
strongPEX1-related Heimler syndromeOTHERAR
definitivePEX1-related peroxisome biogenesis disorderLOFAR

This gene — mechanism propensity

Predictions shown for reference only — model trained on dominant genes, not applicable to AR conditions.

DN
0.6839th %ile
GOF
0.4777th %ile
LOF
0.3259th %ile

The Badonyi & Marsh prediction model was trained exclusively on dominant disease genes. Predictions are not reliable for genes with autosomal recessive inheritance and are shown at reduced opacity for reference only.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

PEX1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.