PELP1

Chr 17

proline, glutamate and leucine rich protein 1

Also known as: MNAR, P160

This protein functions as a transcriptional coactivator for estrogen receptor-mediated gene expression and also plays a critical role in ribosome biogenesis by regulating 28S rRNA maturation and pre-60S ribosomal subunit assembly in the nucleolus. Mutations cause autosomal dominant intellectual disability with developmental delay, and the gene is highly constrained against loss-of-function variants (pLI = 1.0, LOEUF = 0.158). The neurodevelopmental phenotype likely reflects disruption of ribosomal function, which is essential for proper brain development.

OMIMResearchSummary from RefSeq, UniProt
LOFmechanismLOEUF 0.16
Clinical SummaryPELP1
Population Constraint (gnomAD)
Highly constrained gene — heterozygous loss-of-function variants are very rare in the population (pLI 1.00). One damaged copy is likely sufficient to cause disease.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

LoF intolerant — likely haploinsufficient
LoF Constraint
0.16LOEUF
pLI 1.000
Z-score 5.56
OE 0.05 (0.020.16)
Highly constrained

Highly LoF-intolerant (top ~10% of genes)

Missense Constraint
1.12Z-score
OE missense 0.87 (0.810.94)
545 obs / 623.4 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.05 (0.020.16)
00.351.4
Missense OE0.87 (0.810.94)
00.61.4
Synonymous OE1.08
01.21.6
LoF obs/exp: 2 / 39.9Missense obs/exp: 545 / 623.4Syn Z: -1.08
DN
0.2499th %ile
GOF
0.3293th %ile
LOF
0.73top 10%

The highest-scoring mechanism for this gene is loss-of-function (haploinsufficiency).

LOFprediction above median · LOEUF 0.16

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312. Mechanism ranking also informed by gnomAD constraint, ClinVar, and ClinGen data.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

PELP1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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