PDZD4
Chr XPDZ domain containing 4
Also known as: LNX5, LU1, PDZK4, PDZRN4L
Clinical highlights
Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Based on population constraint only.
Population Genetics & Constraint
gnomAD v4 — loss-of-function & missense intolerance
Moderate LoF intolerance
LoF Constraint?
0.40LOEUF
pLI 0.849
Z-score 3.45
OE 0.15 (0.07–0.40)
More LoF-intolerant than ~75% of genes
Missense Constraint?
2.70Z-score
OE missense 0.61 (0.55–0.68)
239 obs / 389.1 exp
Moderately missense-constrained (top ~2.5%)
Observed / Expected Ratios?
LoF OE?0.15 (0.07–0.40)
0≤0.351.4
Missense OE?0.61 (0.55–0.68)
0≤0.61.4
Synonymous OE?0.95
0≤1.21.6
LoF obs/exp: 3 / 19.4Missense obs/exp: 239 / 389.1Syn Z: 0.49
ClinVar Variant Classifications
0 submitted variants in ClinVar
Protein Context — Lollipop Plot
PDZD4 · protein map & ClinVar variants
Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.
External Resources
Links to major genomics databases and tools
Clinical Trials
Active and recruiting trials from ClinicalTrials.gov
No active trials found for this gene.
Search ClinicalTrials.gov →External Resources
Links to major genomics databases and tools