PDCD10

Chr 3AD

programmed cell death 10

Also known as: CCM3, TFAR15

This gene encodes an evolutionarily conserved protein associated with cell apoptosis. The protein interacts with the serine/threonine protein kinase MST4 to modulate the extracellular signal-regulated kinase (ERK) pathway. It also interacts with and is phosphoryated by serine/threonine kinase 25, and is thought to function in a signaling pathway essential for vascular developent. Mutations in this gene are one cause of cerebral cavernous malformations, which are vascular malformations that cause seizures and cerebral hemorrhages. Multiple alternatively spliced variants, encoding the same protein, have been identified. [provided by RefSeq, Jul 2008]

OMIMResearchGenerating clinical summary…
LOFmechanismADLOEUF 0.331 OMIM phenotype
Clinical SummaryPDCD10
Population Constraint (gnomAD)
Highly constrained gene — heterozygous loss-of-function variants are very rare in the population (pLI 0.96). One damaged copy is likely sufficient to cause disease.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

LoF intolerant — likely haploinsufficient
LoF Constraint?
0.33LOEUF
pLI 0.962
Z-score 3.30
OE 0.07 (0.020.33)
Highly constrained

Highly LoF-intolerant (top ~10% of genes)

Missense Constraint?
1.43Z-score
OE missense 0.63 (0.520.76)
74 obs / 117.8 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.07 (0.020.33)
00.351.4
Missense OE?0.63 (0.520.76)
00.61.4
Synonymous OE?0.94
01.21.6
LoF obs/exp: 1 / 14.6Missense obs/exp: 74 / 117.8Syn Z: 0.31

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

PDCD10 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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