PCSK6

Chr 15

proprotein convertase subtilisin/kexin type 6

Also known as: PACE4, SPC4

This gene encodes a member of the subtilisin-like proprotein convertase family, which includes proteases that process protein and peptide precursors trafficking through regulated or constitutive branches of the secretory pathway. The encoded protein undergoes an initial autocatalytic processing event in the ER to generate a heterodimer which exits the ER and sorts to the trans-Golgi network where a second autocatalytic event takes place and the catalytic activity is acquired. The encoded protease is constitutively secreted into the extracellular matrix and expressed in many tissues, including neuroendocrine, liver, gut, and brain. This gene encodes one of the seven basic amino acid-specific members which cleave their substrates at single or paired basic residues. Some of its substrates include transforming growth factor beta related proteins, proalbumin, and von Willebrand factor. This gene is thought to play a role in tumor progression and left-right patterning. Alternatively spliced transcript variants encoding different isoforms have been identified. [provided by RefSeq, Feb 2014]

GeneReviewsOMIMResearchGenerating clinical summary…

Clinical highlights

Gene–disease validity (ClinGen)
evidence has disproved this relationship
0
Active trials
21
Pubs (1 yr)
—
P/LP submissions
—
P/LP missense
0.73
LOEUF
DN
Mechanism· predicted
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GeneReview available — PCSK6
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Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.73LOEUF
pLI 0.000
Z-score 3.14
OE 0.54 (0.40–0.73)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
1.41Z-score
OE missense 0.83 (0.76–0.90)
438 obs / 529.5 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.54 (0.40–0.73)
0≤0.351.4
Missense OE?0.83 (0.76–0.90)
0≤0.61.4
Synonymous OE?0.95
0≤1.21.6
LoF obs/exp: 29 / 53.9Missense obs/exp: 438 / 529.5Syn Z: 0.59

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

PCSK6 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →