PCBD1

Chr 10AR

pterin-4 alpha-carbinolamine dehydratase 1

Also known as: DCOH, PCBD, PCD, PHS

This gene encodes a member of the pterin-4-alpha-carbinolamine dehydratase family. The encoded protein has been identified as a moonlighting protein based on its ability to perform mechanistically distinct functions. The encoded protein functions as both a dehydratase involved in tetrahydrobiopterin biosynthesis, and as a cofactor for HNF1A-dependent transcription. A deficiency of this enzyme leads to hyperphenylalaninemia. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2014]

OMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Hyperphenylalaninemia, BH4-deficient, DMIM #264070
AR

Clinical highlights

Gene-disease validity (ClinGen)
pterin-4 alpha-carbinolamine dehydratase 1 deficiency · ARDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
Pubs (1 yr)
P/LP submissions
P/LP missense
1.83
LOEUF
LOF
Mechanism· G2P

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
1.83LOEUF
pLI 0.000
Z-score -0.11
OE 1.05 (0.541.83)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint?
0.72Z-score
OE missense 0.73 (0.570.95)
42 obs / 57.2 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?1.05 (0.541.83)
00.351.4
Missense OE?0.73 (0.570.95)
00.61.4
Synonymous OE?1.13
01.21.6
LoF obs/exp: 5 / 4.7Missense obs/exp: 42 / 57.2Syn Z: -0.49

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

PCBD1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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