PARD6B

Chr 20

par-6 family cell polarity regulator beta

Also known as: PAR6B

PARD6B encodes an adapter protein that regulates asymmetrical cell division and cell polarization processes, particularly in the formation of epithelial tight junctions through interactions with PARD3 and atypical protein kinase C proteins. Mutations cause autosomal recessive lissencephaly with cerebellar hypoplasia, presenting in infancy with severe developmental delays and seizures. The gene is highly constrained against loss-of-function variants, reflecting its critical role in normal brain development.

Summary from RefSeq, UniProt
Research Assistant →
0
Active trials
8
Pubs (1 yr)
12
P/LP submissions
0%
P/LP missense
0.36
LOEUF
Mechanism
Clinical SummaryPARD6B
Population Constraint (gnomAD)
Highly constrained gene — heterozygous loss-of-function variants are very rare in the population (pLI 0.93). One damaged copy is likely sufficient to cause disease.
📋
ClinVar Variants
12 unique Pathogenic / Likely Pathogenic· 39 VUS of 66 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

LoF intolerant — likely haploinsufficient
LoF Constraint
0.36LOEUF
pLI 0.926
Z-score 2.67
OE 0.00 (0.000.36)
Highly constrained

More LoF-intolerant than ~75% of genes

Missense Constraint
1.39Z-score
OE missense 0.73 (0.630.83)
147 obs / 202.6 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.00 (0.000.36)
00.351.4
Missense OE0.73 (0.630.83)
00.61.4
Synonymous OE0.98
01.21.6
LoF obs/exp: 0 / 8.3Missense obs/exp: 147 / 202.6Syn Z: 0.16

ClinVar Variant Classifications

66 submitted variants in ClinVar

Classification Summary

Pathogenic9
Likely Pathogenic3
VUS39
Likely Benign2
Benign1
9
Pathogenic
3
Likely Pathogenic
39
VUS
2
Likely Benign
1
Benign

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
0
0
9
0
9
Likely Pathogenic
0
0
3
0
3
VUS
0
38
1
0
39
Likely Benign
0
1
1
0
2
Benign
0
1
0
0
1
Total04014054

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

PARD6B · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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