PAQR4

Chr 16

progestin and adipoQ receptor family member 4

The protein functions as a molecular adaptor that stabilizes ceramide synthases CERS2 and CERS5, regulating ceramide biosynthesis and maintaining adipose tissue function through ceramide level control. This gene is highly constrained against loss-of-function variants (pLI=1.0, LOEUF=1.7), suggesting mutations would likely cause severe disease, though specific pediatric neurogenetic disorders associated with PAQR4 mutations have not been established in the provided data. The inheritance pattern for PAQR4-related conditions has not been determined.

OMIMResearchSummary from RefSeq, UniProt
MultiplemechanismLOEUF 1.70
Clinical SummaryPAQR4
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.70LOEUF
pLI 0.000
Z-score -0.03
OE 1.01 (0.611.70)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
-0.41Z-score
OE missense 1.09 (0.971.22)
196 obs / 180.4 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios
LoF OE1.01 (0.611.70)
00.351.4
Missense OE1.09 (0.971.22)
00.61.4
Synonymous OE1.21
01.21.6
LoF obs/exp: 9 / 8.9Missense obs/exp: 196 / 180.4Syn Z: -1.50
DN
0.6455th %ile
GOF
0.6930th %ile
LOF
0.3744th %ile

This gene has evidence for multiple mechanisms of pathogenicity (gain-of-function and dominant-negative). Both the Badonyi & Marsh prediction and the broader genomic evidence point to gain-of-function as the predominant mechanism. Different variants in this gene may act through different mechanisms — interpret in context of the specific variant.

GOFprediction above median
DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

PAQR4 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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