PAN2

Chr 12AR

poly(A) specific ribonuclease subunit PAN2

Also known as: DEDCRF, USP52

This gene encodes a deadenylase that functions as the catalytic subunit of the polyadenylate binding protein dependent poly(A) nuclease complex. The encoded protein is a magnesium dependent 3' to 5' exoribonuclease that is involved in the degradation of cytoplasmic mRNAs. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Oct 2009]

OMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Developmental delay with variable cardiac and renal congenital anomalies and dysmorphic faciesMIM #621384
AR

Clinical highlights

Gene-disease validity (ClinGen)
syndromic complex neurodevelopmental disorder · ARModerateconsider for supplementary testing
Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
11
Pubs (1 yr)
P/LP submissions
P/LP missense
0.32
LOEUF· LoF intol.
LOF
Mechanism· predicted

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Dual constrained — LoF & missense intolerant
LoF Constraint?
0.32LOEUF
pLI 0.936
Z-score 5.86
OE 0.19 (0.120.32)
Highly constrained

Highly LoF-intolerant (top ~10% of genes)

Missense Constraint?
3.18Z-score
OE missense 0.66 (0.610.71)
448 obs / 681.3 exp
Constrained

Highly missense-constrained (top ~0.1%)

Observed / Expected Ratios?
LoF OE?0.19 (0.120.32)
00.351.4
Missense OE?0.66 (0.610.71)
00.61.4
Synonymous OE?0.89
01.21.6
LoF obs/exp: 12 / 61.6Missense obs/exp: 448 / 681.3Syn Z: 1.36

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

PAN2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →