PAM16

Chr 16AR

presequence translocase associated motor 16

Also known as: CGI-136, MAGMAS, SMDMDM, TIM16, TIMM16

This gene encodes a mitochondrial protein involved in granulocyte-macrophage colony-stimulating factor (GM-CSF) signaling. This protein also plays a role in the import of nuclear-encoded mitochondrial proteins into the mitochondrial matrix and may be important in reactive oxygen species (ROS) homeostasis. Mutations in this gene cause Megarbane-Dagher-Melike type spondylometaphyseal dysplasia, an early lethal skeletal dysplasia characterized by short stature, developmental delay and other skeletal abnormalities. [provided by RefSeq, May 2017]

OMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Spondylometaphyseal dysplasia, Megarbane-Dagher-Melike typeMIM #613320
AR

Clinical highlights

Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Based on population constraint only.
0
Active trials
6
Pubs (1 yr)
P/LP submissions
P/LP missense
0.86
LOEUF
DN
Mechanism· predicted

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.86LOEUF
pLI 0.235
Z-score 1.82
OE 0.27 (0.110.86)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
-0.51Z-score
OE missense 1.16 (0.981.38)
94 obs / 81.1 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios?
LoF OE?0.27 (0.110.86)
00.351.4
Missense OE?1.16 (0.981.38)
00.61.4
Synonymous OE?1.00
01.21.6
LoF obs/exp: 2 / 7.3Missense obs/exp: 94 / 81.1Syn Z: 0.01

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

PAM16 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →