OVOL2

Chr 20AD

ovo like zinc finger 2

Also known as: CHED, CHED1, CHED2, EUROIMAGE566589, PPCD1, ZNF339

OVOL2 encodes a zinc-finger transcription repressor that maintains epithelial cell identity by suppressing epithelial-to-mesenchymal transition and regulates neuronal differentiation, keratinocyte cycling, and adipose tissue development. Mutations cause posterior polymorphous corneal dystrophy type 1, an autosomal dominant condition affecting corneal endothelial cells. The gene shows moderate constraint against loss-of-function variants (LOEUF 0.567), suggesting some tolerance to haploinsufficiency.

Summary from RefSeq, OMIM, UniProt
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Primary Disease Associations & Inheritance

Corneal dystrophy, posterior polymorphous, 1MIM #122000
AD
0
Active trials
6
Pubs (1 yr)
27
P/LP submissions
0%
P/LP missense
0.57
LOEUF
LOF
Mechanism· predicted
Clinical SummaryOVOL2
Population Constraint (gnomAD)
Moderately constrained gene (pLI 0.71) — some intolerance to loss-of-function variants.
📋
ClinVar Variants
27 unique Pathogenic / Likely Pathogenic· 44 VUS of 92 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint
0.57LOEUF
pLI 0.709
Z-score 2.36
OE 0.12 (0.040.57)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint
1.09Z-score
OE missense 0.75 (0.640.88)
114 obs / 151.8 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.12 (0.040.57)
00.351.4
Missense OE0.75 (0.640.88)
00.61.4
Synonymous OE0.88
01.21.6
LoF obs/exp: 1 / 8.4Missense obs/exp: 114 / 151.8Syn Z: 0.77
Curated Mechanism (G2P)Gene2Phenotype (DDG2P) ↗
definitiveOVOL2-related corneal dystrophy, posterior polymorphousOTHERAD
DN
0.5673th %ile
GOF
0.5268th %ile
LOF
0.64top 25%

The highest-scoring mechanism for this gene is loss-of-function (haploinsufficiency).

LOFprediction above median

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

92 submitted variants in ClinVar

Classification Summary

Pathogenic27
VUS44
Likely Benign9
Benign7
27
Pathogenic
44
VUS
9
Likely Benign
7
Benign

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
0
0
27
0
27
Likely Pathogenic
0
0
0
0
0
VUS
0
36
8
0
44
Likely Benign
0
2
1
6
9
Benign
0
2
4
1
7
Total04040787

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

OVOL2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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