OTUD7A

Chr 15AR

OTU deubiquitinase 7A

Also known as: C15orf16, C16ORF15, CEZANNE2, NEDHS, OTUD7

The protein encoded by this gene is a deubiquitinizing enzyme and possible tumor suppressor. The encoded protein acts on TNF receptor associated factor 6 (TRAF6) to control nuclear factor kappa B expression. However, this gene is downregulated by SNAIL1 in hepatocellular carcinoma cells, contributing to their progression and malignancy. [provided by RefSeq, Aug 2016]

GeneReviewsOMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Neurodevelopmental disorder with hypotonia and seizuresMIM #620790
AR

Clinical highlights

Gene-disease validity (ClinGen)
complex neurodevelopmental disorder · ARLimitednot for standalone diagnostic reporting
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype) and the gene is intolerant of it in the population — truncating, frameshift and canonical splice variants carry more prior weight here than missense.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
10
Pubs (1 yr)
P/LP submissions
P/LP missense
0.33
LOEUF· LoF intol.
LOF
Mechanism· G2P
📖
GeneReview available — OTUD7A
Authoritative clinical overview · Recommended first read
Open GeneReview ↗

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

LoF intolerant — likely haploinsufficient
LoF Constraint?
0.33LOEUF
pLI 0.952
Z-score 4.39
OE 0.16 (0.080.33)
Highly constrained

Highly LoF-intolerant (top ~10% of genes)

Missense Constraint?
2.86Z-score
OE missense 0.62 (0.560.69)
284 obs / 456.2 exp
Mild constraint

Moderately missense-constrained (top ~2.5%)

Observed / Expected Ratios?
LoF OE?0.16 (0.080.33)
00.351.4
Missense OE?0.62 (0.560.69)
00.61.4
Synonymous OE?1.05
01.21.6
LoF obs/exp: 5 / 31.6Missense obs/exp: 284 / 456.2Syn Z: -0.57

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

OTUD7A · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →