OR6B2

Chr 2

olfactory receptor family 6 subfamily B member 2

Also known as: OR2-1, OR6B2P

The OR6B2 protein is an olfactory receptor that binds odorant molecules in the nose and initiates G protein-mediated signal transduction for smell perception. Currently, no Mendelian diseases have been definitively associated with mutations in OR6B2. This gene shows low constraint against loss-of-function variants (pLI = 0.02, LOEUF = 1.44), suggesting it is tolerant to inactivating mutations.

Summary from RefSeq, UniProt
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0
Active trials
0
Pubs (1 yr)
0
P/LP submissions
P/LP missense
1.44
LOEUF
Multiple*
Mechanism· predicted
Clinical SummaryOR6B2
Population Constraint (gnomAD)
Low constraint (pLI 0.02) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.44LOEUF
pLI 0.022
Z-score 0.91
OE 0.57 (0.261.44)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
-0.33Z-score
OE missense 1.07 (0.951.21)
192 obs / 179.6 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios
LoF OE0.57 (0.261.44)
00.351.4
Missense OE1.07 (0.951.21)
00.61.4
Synonymous OE1.21
01.21.6
LoF obs/exp: 3 / 5.3Missense obs/exp: 192 / 179.6Syn Z: -1.49
DN
0.88top 5%
GOF
0.88top 5%
LOF
0.1299th %ile

This gene has evidence for multiple mechanisms of pathogenicity (dominant-negative and gain-of-function). Both the Badonyi & Marsh prediction and the broader genomic evidence point to dominant-negative as the predominant mechanism. Different variants in this gene may act through different mechanisms — interpret in context of the specific variant.

DNprediction above median
GOFprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

OR6B2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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Key Publications
Landmark & review papers · by relevance
PubMed
Top 1 results · since 2015Search PubMed ↗
Recent Gene-Specific Literature
Gene in title · MEDLINE · newest first
Europe PMC

No open access results found