OR2C3

Chr 1

olfactory receptor family 2 subfamily C member 3

Also known as: OR2C4, OR2C5P, OST742

OR2C3 encodes an olfactory receptor that binds odorant molecules in the nose and initiates G-protein-coupled signaling to trigger smell perception. No established Mendelian diseases are currently associated with mutations in this gene. The gene shows low constraint to loss-of-function variation (pLI 0.006, LOEUF 1.44), consistent with most olfactory receptor genes being tolerant to disruption.

ResearchSummary from RefSeq, UniProt
MultiplemechanismLOEUF 1.44
Clinical SummaryOR2C3
Population Constraint (gnomAD)
Low constraint (pLI 0.01) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.44LOEUF
pLI 0.006
Z-score 0.84
OE 0.64 (0.311.44)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
-0.02Z-score
OE missense 1.00 (0.891.13)
187 obs / 186.2 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios
LoF OE0.64 (0.311.44)
00.351.4
Missense OE1.00 (0.891.13)
00.61.4
Synonymous OE1.17
01.21.6
LoF obs/exp: 4 / 6.3Missense obs/exp: 187 / 186.2Syn Z: -1.18
DN
0.85top 10%
GOF
0.84top 5%
LOF
0.1499th %ile

This gene has evidence for multiple mechanisms of pathogenicity (dominant-negative and gain-of-function). Both the Badonyi & Marsh prediction and the broader genomic evidence point to dominant-negative as the predominant mechanism. Different variants in this gene may act through different mechanisms — interpret in context of the specific variant.

DNprediction above median
GOFprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

OR2C3 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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