OR13C4

Chr 9

olfactory receptor family 13 subfamily C member 4

Also known as: HSHTPCRX17, HTPCRX17, OR2K1, OR37F, OR9-7

The OR13C4 protein is an olfactory receptor that recognizes specific odorant molecules and initiates G protein-mediated signaling to trigger smell perception. This gene is not constrained against loss-of-function variants and currently has no established disease associations in pediatric neurogenetics. Mutations in olfactory receptor genes typically affect smell perception rather than causing neurological disorders.

ResearchSummary from RefSeq, UniProt
MultiplemechanismLOEUF 1.93
Clinical SummaryOR13C4
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.93LOEUF
pLI 0.000
Z-score -1.22
OE 1.51 (0.891.93)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
0.12Z-score
OE missense 0.97 (0.861.11)
163 obs / 167.4 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE1.51 (0.891.93)
00.351.4
Missense OE0.97 (0.861.11)
00.61.4
Synonymous OE1.12
01.21.6
LoF obs/exp: 10 / 6.6Missense obs/exp: 163 / 167.4Syn Z: -0.73
DN
0.84top 10%
GOF
0.81top 10%
LOF
0.1993th %ile

This gene has evidence for multiple mechanisms of pathogenicity (dominant-negative and gain-of-function). Both the Badonyi & Marsh prediction and the broader genomic evidence point to dominant-negative as the predominant mechanism. Different variants in this gene may act through different mechanisms — interpret in context of the specific variant.

DNprediction above median
GOFprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

OR13C4 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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