OFD1

Chr XXLDXLR

OFD1 centriole and centriolar satellite protein

Also known as: 71-7A, CXorf5, JBTS10, RP23, SGBS2

This gene is located on the X chromosome and encodes a centrosomal protein. A knockout mouse model has been used to study the effect of mutations in this gene. The mouse gene is also located on the X chromosome, however, unlike the human gene it is not subject to X inactivation. Mutations in this gene are associated with oral-facial-digital syndrome type I and Simpson-Golabi-Behmel syndrome type 2. Many pseudogenes have been identified; a single pseudogene is found on chromosome 5 while as many as fifteen have been found on the Y chromosome. [provided by RefSeq, Aug 2016]

OMIMResearchGenerating clinical summary…
LOFmechanismXLD/XLRLOEUF 0.325 OMIM phenotypes
Clinical SummaryOFD1
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Gene-Disease Validity (ClinGen)
OFD1-related ciliopathy · XLDefinitive

Definitive — sufficient evidence for diagnostic panels

Population Constraint (gnomAD)
Highly constrained gene — heterozygous loss-of-function variants are very rare in the population (pLI 0.96). One damaged copy is likely sufficient to cause disease.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

LoF intolerant — likely haploinsufficient
LoF Constraint?
0.32LOEUF
pLI 0.960
Z-score 4.91
OE 0.17 (0.100.32)
Highly constrained

Highly LoF-intolerant (top ~10% of genes)

Missense Constraint?
0.32Z-score
OE missense 0.95 (0.871.04)
350 obs / 367.2 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.17 (0.100.32)
00.351.4
Missense OE?0.95 (0.871.04)
00.61.4
Synonymous OE?1.06
01.21.6
LoF obs/exp: 7 / 40.9Missense obs/exp: 350 / 367.2Syn Z: -0.51

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

OFD1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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