NYX

Chr XXLR

nyctalopin

Also known as: CLRP, CSNB1, CSNB1A, CSNB4, NBM1

The product of this gene belongs to the small leucine-rich proteoglycan (SLRP) family of proteins. Defects in this gene are the cause of congenital stationary night blindness type 1 (CSNB1), also called X-linked congenital stationary night blindness (XLCSNB). CSNB1 is a rare inherited retinal disorder characterized by impaired scotopic vision, myopia, hyperopia, nystagmus and reduced visual acuity. The role of other SLRP proteins suggests that mutations in this gene disrupt developing retinal interconnections involving the ON-bipolar cells, leading to the visual losses seen in patients with complete CSNB. [provided by RefSeq, Oct 2008]

GeneReviewsOMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Night blindness, congenital stationary (complete), 1A, X-linkedMIM #310500
XLR

Clinical highlights

Gene-disease validity (ClinGen)
NYX-related retinopathy · XLDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
20
Pubs (1 yr)
P/LP submissions
P/LP missense
1.13
LOEUF
LOF*
Mechanism· G2P
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GeneReview available — NYX
Authoritative clinical overview · Recommended first read
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Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
1.13LOEUF
pLI 0.130
Z-score 1.39
OE 0.36 (0.151.13)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint?
2.11Z-score
OE missense 0.59 (0.510.69)
126 obs / 212.8 exp
Mild constraint

Moderately missense-constrained (top ~2.5%)

Observed / Expected Ratios?
LoF OE?0.36 (0.151.13)
00.351.4
Missense OE?0.59 (0.510.69)
00.61.4
Synonymous OE?0.65
01.21.6
LoF obs/exp: 2 / 5.5Missense obs/exp: 126 / 212.8Syn Z: 2.77

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

NYX · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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