NUP62CL

Chr X

nucleoporin 62 C-terminal like

This gene encodes a protein containing a nucleoporin domain, which are glycoproteins that form nuclear pore complexes responsible for transport between the nucleus and cytoplasm. The gene is not highly constrained against loss-of-function variants (pLI = 0.001, LOEUF = 1.49), and no well-established disease associations have been reported in the provided data.

Summary from RefSeq
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0
Active trials
0
Pubs (1 yr)
0
P/LP submissions
P/LP missense
1.49
LOEUF
DN
Mechanism· predicted
Clinical SummaryNUP62CL
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.49LOEUF
pLI 0.001
Z-score 0.68
OE 0.72 (0.381.49)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
0.27Z-score
OE missense 0.90 (0.721.13)
54 obs / 59.8 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.72 (0.381.49)
00.351.4
Missense OE0.90 (0.721.13)
00.61.4
Synonymous OE0.80
01.21.6
LoF obs/exp: 5 / 6.9Missense obs/exp: 54 / 59.8Syn Z: 0.78
DN
0.82top 10%
GOF
0.6346th %ile
LOF
0.1895th %ile

The highest-scoring mechanism for this gene is dominant-negative.

DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

NUP62CL · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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Key Publications
Landmark & review papers · by relevance
PubMed
Top 1 results · since 2015Search PubMed ↗
Recent Gene-Specific Literature
Gene in title · MEDLINE · newest first
Europe PMC