NUDT2

Chr 9AR

nudix hydrolase 2

Also known as: APAH1, IDDPN

The NUDT2 protein is a nucleotide pyrophosphatase that hydrolyzes diadenosine tetraphosphate (Ap4A) to maintain intracellular dinucleotide levels and exhibits decapping activity towards certain RNA molecules. Biallelic mutations cause autosomal recessive intellectual developmental disorder with or without peripheral neuropathy. The gene is not highly constrained against loss-of-function variants, consistent with its recessive inheritance pattern.

OMIMResearchSummary from RefSeq, OMIM, UniProt
LOFmechanismARLOEUF 1.451 OMIM phenotype
Clinical SummaryNUDT2
Population Constraint (gnomAD)
Low constraint (pLI 0.01) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.45LOEUF
pLI 0.006
Z-score 0.82
OE 0.65 (0.321.45)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
0.48Z-score
OE missense 0.85 (0.701.04)
68 obs / 80.2 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.65 (0.321.45)
00.351.4
Missense OE0.85 (0.701.04)
00.61.4
Synonymous OE1.04
01.21.6
LoF obs/exp: 4 / 6.2Missense obs/exp: 68 / 80.2Syn Z: -0.18

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

NUDT2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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