NSUN6

Chr 10AR

NOP2/Sun RNA methyltransferase 6

Also known as: 4933414E04Rik, ARL5B-AS1, MRT82, NOPD1

Enables tRNA (cytidine-N5)-methyltransferase activity and tRNA binding activity. Involved in tRNA C5-cytosine methylation. Located in cytoplasm. Implicated in autosomal recessive intellectual developmental disorder 82. [provided by Alliance of Genome Resources, Jun 2026]

OMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Intellectual developmental disorder, autosomal recessive 82MIM #620779
AR

Clinical highlights

Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
40
Pubs (1 yr)
P/LP submissions
P/LP missense
1.48
LOEUF
LOF
Mechanism· G2P

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
1.48LOEUF
pLI 0.000
Z-score -0.34
OE 1.07 (0.791.48)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint?
-1.33Z-score
OE missense 1.24 (1.131.37)
292 obs / 234.8 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios?
LoF OE?1.07 (0.791.48)
00.351.4
Missense OE?1.24 (1.131.37)
00.61.4
Synonymous OE?1.19
01.21.6
LoF obs/exp: 27 / 25.2Missense obs/exp: 292 / 234.8Syn Z: -1.41

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

NSUN6 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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