NSDHL

Chr XXLDXLR

NAD(P) dependent 3-beta-hydroxysteroid dehydrogenase NSDHL

Also known as: H105E3, SDR31E1, XAP104

The protein encoded by this gene is localized in the endoplasmic reticulum and is involved in cholesterol biosynthesis. Mutations in this gene are associated with CHILD syndrome, which is a X-linked dominant disorder of lipid metabolism with disturbed cholesterol biosynthesis, and typically lethal in males. Alternatively spliced transcript variants with differing 5' UTR have been found for this gene. [provided by RefSeq, Jul 2008]

GeneReviewsOMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

CHILD syndromeMIM #308050
XLD
CK syndromeMIM #300831
XLR
UniProtCongenital hemidysplasia with ichthyosiform erythroderma and limb defects

Clinical highlights

Gene-disease validity (ClinGen)
CK syndrome · XLModerateconsider for supplementary testing
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype) and the gene is intolerant of it in the population — truncating, frameshift and canonical splice variants carry more prior weight here than missense.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
21
Pubs (1 yr)
P/LP submissions
P/LP missense
0.29
LOEUF· LoF intol.
LOF
Mechanism· G2P
📖
GeneReview available — NSDHL
Authoritative clinical overview · Recommended first read
Open GeneReview ↗

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

LoF intolerant — likely haploinsufficient
LoF Constraint?
0.29LOEUF
pLI 0.964
Z-score 2.98
OE 0.00 (0.000.29)
Highly constrained

Highly LoF-intolerant (top ~10% of genes)

Missense Constraint?
0.87Z-score
OE missense 0.80 (0.690.93)
124 obs / 154.4 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.00 (0.000.29)
00.351.4
Missense OE?0.80 (0.690.93)
00.61.4
Synonymous OE?1.16
01.21.6
LoF obs/exp: 0 / 10.3Missense obs/exp: 124 / 154.4Syn Z: -1.02

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

NSDHL · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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