NRP1

Chr 10

neuropilin 1

Also known as: BDCA4, CD304, NP1, NRP, VEGF165R

Neuropilin-1 functions as a co-receptor that binds vascular endothelial growth factor (VEGF) and semaphorin family members to control cell migration, survival, and attraction during development. Mutations cause congenital insensitivity to pain with anhidrosis through an autosomal recessive inheritance pattern, affecting the peripheral nervous system and sweat gland function. This gene is highly constrained against loss-of-function variants (pLI = 0.99), indicating that heterozygous loss-of-function mutations are likely to be pathogenic.

Summary from RefSeq, UniProt
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1
Active trials
138
Pubs (1 yr)
0
P/LP submissions
P/LP missense
0.30
LOEUF· LoF intol.
Mechanism
Clinical SummaryNRP1
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Gene-Disease Validity (ClinGen)
congenital heart disease · ARLimited

Limited evidence — not for standalone diagnostic reporting

Population Constraint (gnomAD)
Highly constrained gene — heterozygous loss-of-function variants are very rare in the population (pLI 0.99). One damaged copy is likely sufficient to cause disease.
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Clinical Trials
1 active or recruiting trial — potential therapeutic options may be available

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

LoF intolerant — likely haploinsufficient
LoF Constraint
0.30LOEUF
pLI 0.986
Z-score 5.36
OE 0.17 (0.100.30)
Highly constrained

Highly LoF-intolerant (top ~10% of genes)

Missense Constraint
1.56Z-score
OE missense 0.81 (0.750.88)
434 obs / 535.6 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.17 (0.100.30)
00.351.4
Missense OE0.81 (0.750.88)
00.61.4
Synonymous OE1.03
01.21.6
LoF obs/exp: 8 / 48.2Missense obs/exp: 434 / 535.6Syn Z: -0.32

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

NRP1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Literature
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