NOL8

Chr 9

nucleolar protein 8

Also known as: C9orf34, NOP132, bA62C3.3, bA62C3.4

NOL8 encodes a nucleolar protein that binds Ras-related GTP-binding proteins and acts as an anchoring protein for DDX47, potentially involved in ribosome biogenesis and post-transcriptional gene regulation. Mutations cause autosomal recessive intellectual disability with microcephaly, short stature, and facial dysmorphism. The gene shows tolerance to loss-of-function variants in the general population.

OMIMResearchSummary from RefSeq, UniProt
DNmechanismLOEUF 0.82
Clinical SummaryNOL8
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.
📋
ClinVar Variants
29 unique Pathogenic / Likely Pathogenic· 178 VUS of 245 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
0.82LOEUF
pLI 0.000
Z-score 2.52
OE 0.60 (0.450.82)
Tolerant

Typical tolerance to LoF variation

Missense Constraint
0.44Z-score
OE missense 0.95 (0.891.02)
557 obs / 586.9 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.60 (0.450.82)
00.351.4
Missense OE0.95 (0.891.02)
00.61.4
Synonymous OE0.92
01.21.6
LoF obs/exp: 28 / 46.5Missense obs/exp: 557 / 586.9Syn Z: 0.93
DN
0.7035th %ile
GOF
0.3689th %ile
LOF
0.3941th %ile

The highest-scoring mechanism for this gene is dominant-negative.

DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

245 submitted variants in ClinVar

Classification Summary

Pathogenic26
Likely Pathogenic3
VUS178
Likely Benign13
26
Pathogenic
3
Likely Pathogenic
178
VUS
13
Likely Benign

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
0
0
26
0
26
Likely Pathogenic
0
0
3
0
3
VUS
0
160
18
0
178
Likely Benign
0
13
0
0
13
Benign
0
0
0
0
0
Total0173470220

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

NOL8 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
Open Research Assistant →
Key Publications
Landmark & review papers · by relevance
PubMed
Top 1 results · since 2015Search PubMed ↗