NOL4L

Chr 20

nucleolar protein 4 like

Also known as: C20orf112, C20orf113

Located in cytosol and nucleoplasm. [provided by Alliance of Genome Resources, Jul 2025]

0
Active trials
0
Pubs (1 yr)
18
P/LP submissions
0%
P/LP missense
0.19
LOEUF· LoF intol.
LOF
Mechanism· predicted
Clinical SummaryNOL4L
Population Constraint (gnomAD)
Highly constrained gene — heterozygous loss-of-function variants are very rare in the population (pLI 0.99). One damaged copy is likely sufficient to cause disease.
📋
ClinVar Variants
18 unique Pathogenic / Likely Pathogenic· 64 VUS of 97 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

LoF intolerant — likely haploinsufficient
LoF Constraint
0.19LOEUF
pLI 0.995
Z-score 3.67
OE 0.00 (0.000.19)
Highly constrained

Highly LoF-intolerant (top ~10% of genes)

Missense Constraint
1.96Z-score
OE missense 0.68 (0.600.76)
198 obs / 292.4 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.00 (0.000.19)
00.351.4
Missense OE0.68 (0.600.76)
00.61.4
Synonymous OE1.17
01.21.6
LoF obs/exp: 0 / 15.7Missense obs/exp: 198 / 292.4Syn Z: -1.50
DN
0.3693th %ile
GOF
0.3193th %ile
LOF
0.75top 10%

The highest-scoring mechanism for this gene is loss-of-function (haploinsufficiency).

LOFprediction above median · LOEUF 0.19

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312. Mechanism ranking also informed by gnomAD constraint, ClinVar, and ClinGen data.

ClinVar Variant Classifications

97 submitted variants in ClinVar

Classification Summary

Pathogenic13
Likely Pathogenic5
VUS64
Likely Benign4
13
Pathogenic
5
Likely Pathogenic
64
VUS
4
Likely Benign

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
0
0
13
0
13
Likely Pathogenic
0
0
5
0
5
VUS
0
60
4
0
64
Likely Benign
0
2
0
2
4
Benign
0
0
0
0
0
Total06222286

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

NOL4L · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
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