NOC2L

Chr 1

NOC2 like nucleolar associated transcriptional repressor

Also known as: NET15, NET7, NIR, PPP1R112

The NOC2L protein inhibits histone acetyltransferase activity and acts as a transcription corepressor, particularly regulating p53-mediated gene expression and apoptosis. The gene shows minimal constraint against loss-of-function variants, suggesting that complete loss of NOC2L function may be tolerated. Currently, no definitive human disease associations have been established for NOC2L mutations in clinical practice.

Summary from RefSeq, UniProt
Research Assistant →
0
Active trials
8
Pubs (1 yr)
128
P/LP submissions
0%
P/LP missense
1.33
LOEUF
Mechanism
Clinical SummaryNOC2L
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.
📋
ClinVar Variants
121 unique Pathogenic / Likely Pathogenic· 166 VUS of 342 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.33LOEUF
pLI 0.000
Z-score -0.17
OE 1.03 (0.811.33)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
-1.90Z-score
OE missense 1.25 (1.171.34)
577 obs / 462.0 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios
LoF OE1.03 (0.811.33)
00.351.4
Missense OE1.25 (1.171.34)
00.61.4
Synonymous OE1.60
01.21.6
LoF obs/exp: 43 / 41.8Missense obs/exp: 577 / 462.0Syn Z: -6.71

ClinVar Variant Classifications

342 submitted variants in ClinVar

Classification Summary

Pathogenic116
Likely Pathogenic5
VUS166
Likely Benign18
Benign10
116
Pathogenic
5
Likely Pathogenic
166
VUS
18
Likely Benign
10
Benign

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
0
0
116
0
116
Likely Pathogenic
0
0
5
0
5
VUS
0
152
14
0
166
Likely Benign
0
11
1
6
18
Benign
0
0
5
5
10
Total016314111315

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

NOC2L · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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