NKX2-2

Chr 20

NK2 homeobox 2

Also known as: NKX2.2, NKX2B

The protein encoded by this gene contains a homeobox domain and may be involved in the morphogenesis of the central nervous system. This gene is found on chromosome 20 near NKX2-4, and these two genes appear to be duplicated on chromosome 14 in the form of TITF1 and NKX2-8. The encoded protein is likely to be a nuclear transcription factor. [provided by RefSeq, Jul 2008]

GeneReviewsOMIMResearchGenerating clinical summary…

Clinical highlights

Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Based on population constraint only.
0
Active trials
10
Pubs (1 yr)
P/LP submissions
P/LP missense
0.67
LOEUF
DN
Mechanism· predicted
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GeneReview available — NKX2-2
Authoritative clinical overview · Recommended first read
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Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.67LOEUF
pLI 0.414
Z-score 2.25
OE 0.21 (0.090.67)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
0.00Z-score
OE missense 1.00 (0.881.14)
161 obs / 161.1 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.21 (0.090.67)
00.351.4
Missense OE?1.00 (0.881.14)
00.61.4
Synonymous OE?1.35
01.21.6
LoF obs/exp: 2 / 9.5Missense obs/exp: 161 / 161.1Syn Z: -2.38

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

NKX2-2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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