NIPBL
Chr 5ADNIPBL cohesin loading factor
Also known as: CDLS, CDLS1, IDN3, IDN3-B, Scc2
The protein functions as a cohesin loading factor that facilitates sister chromatid cohesion and enables enhancer-promoter communication for proper developmental gene regulation. Loss-of-function mutations cause Cornelia de Lange syndrome 1, an autosomal dominant disorder characterized by distinctive facial features, growth delay, limb defects, and intellectual disability. The high intolerance to loss-of-function variants (pLI=1) reflects the protein's essential role in chromatin organization and gene expression during development.
Definitive — sufficient evidence for diagnostic panels
Population Genetics & Constraint
gnomAD v4 — loss-of-function & missense intolerance
Among the most LoF-intolerant genes (~top 3%)
Extremely missense-constrained (top ~0.01%)
The highest-scoring mechanism for this gene is loss-of-function (haploinsufficiency).
Literature Evidence
Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312. Mechanism ranking also informed by gnomAD constraint, ClinVar, and ClinGen data.
ClinVar Variant Classifications
0 submitted variants in ClinVar
Protein Context — Lollipop Plot
NIPBL · protein map & ClinVar variants
Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.
3D Protein StructureAlphaFold
External Resources
Links to major genomics databases and tools
Clinical Trials
Active and recruiting trials from ClinicalTrials.gov
External Resources
Links to major genomics databases and tools