NICOL1

Chr 4

NELL2 interacting cell ontogeny regulator 1

Also known as: C4orf48, CHR4_55, NICOL

The protein binds to the 3'-UTR of target mRNAs including SERPINE1, ACTA2, CCN2 and COL4A1, stabilizing these transcripts and promoting extracellular matrix production, and also functions as a testis-derived factor that triggers epididymal differentiation and sperm maturation. Based on the available data, no specific disease associations or inheritance patterns have been established for NICOL1 mutations in pediatric populations.

Summary from RefSeq, UniProt
Research Assistant →
0
Active trials
2
Pubs (1 yr)
140
P/LP submissions
P/LP missense
1.32
LOEUF
Mechanism
Clinical SummaryNICOL1
Population Constraint (gnomAD)
Moderately constrained gene (pLI 0.51) — some intolerance to loss-of-function variants.
📋
ClinVar Variants
140 unique Pathogenic / Likely Pathogenic· 13 VUS of 158 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint
1.32LOEUF
pLI 0.514
Z-score 1.33
OE 0.00 (0.001.32)
Moderately constrained

Highly tolerant — LoF variants common in population

Missense Constraint
-0.21Z-score
OE missense 1.10 (0.851.45)
37 obs / 33.5 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios
LoF OE0.00 (0.001.32)
00.351.4
Missense OE1.10 (0.851.45)
00.61.4
Synonymous OE1.06
01.21.6
LoF obs/exp: 0 / 2.1Missense obs/exp: 37 / 33.5Syn Z: -0.17

ClinVar Variant Classifications

158 submitted variants in ClinVar

Classification Summary

Pathogenic134
Likely Pathogenic6
VUS13
Likely Benign1
134
Pathogenic
6
Likely Pathogenic
13
VUS
1
Likely Benign

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories· variant type breakdown unavailable

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
134
Likely Pathogenic
6
VUS
13
Likely Benign
1
Benign
0
Total154

Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

NICOL1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →