NICOL1

Chr 4

NELL2 interacting cell ontogeny regulator 1

Also known as: C4orf48, CHR4_55, NICOL

Predicted to enable mRNA 3'-UTR binding activity. Predicted to be involved in 3'-UTR-mediated mRNA stabilization and spermatogenesis. Predicted to be located in perinuclear region of cytoplasm. Predicted to be active in obsolete extracellular space. [provided by Alliance of Genome Resources, Jun 2026]

OMIMResearchGenerating clinical summary…

Clinical highlights

Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Based on population constraint only.
0
Active trials
2
Pubs (1 yr)
P/LP submissions
P/LP missense
1.32
LOEUF
Mechanism

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint?
1.32LOEUF
pLI 0.514
Z-score 1.33
OE 0.00 (0.001.32)
Moderately constrained

Highly tolerant — LoF variants common in population

Missense Constraint?
-0.21Z-score
OE missense 1.10 (0.851.45)
37 obs / 33.5 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios?
LoF OE?0.00 (0.001.32)
00.351.4
Missense OE?1.10 (0.851.45)
00.61.4
Synonymous OE?1.06
01.21.6
LoF obs/exp: 0 / 2.1Missense obs/exp: 37 / 33.5Syn Z: -0.17

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

NICOL1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →