NEGR1

Chr 1

neuronal growth regulator 1

Also known as: DMML2433, IGLON4, KILON, Ntra

Enables transmembrane transporter binding activity. Acts upstream of or within several processes, including cholesterol homeostasis; protein localization to plasma membrane raft; and regulation of protein stability. Located in late endosome and plasma membrane. [provided by Alliance of Genome Resources, Jun 2026]

ResearchGenerating clinical summary…

Clinical highlights

Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Based on population constraint only.
1
Active trials
43
Pubs (1 yr)
P/LP submissions
P/LP missense
0.25
LOEUF· LoF intol.
LOF
Mechanism· predicted
Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

LoF intolerant — likely haploinsufficient
LoF Constraint?
0.25LOEUF
pLI 0.992
Z-score 3.80
OE 0.05 (0.020.25)
Highly constrained

Highly LoF-intolerant (top ~10% of genes)

Missense Constraint?
1.64Z-score
OE missense 0.67 (0.580.78)
135 obs / 200.2 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.05 (0.020.25)
00.351.4
Missense OE?0.67 (0.580.78)
00.61.4
Synonymous OE?1.05
01.21.6
LoF obs/exp: 1 / 18.8Missense obs/exp: 135 / 200.2Syn Z: -0.34

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

NEGR1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.