NDUFV3

Chr 21

NADH:ubiquinone oxidoreductase subunit V3

Also known as: CI-10k, CI-9KD

The NDUFV3 protein is an accessory subunit of mitochondrial respiratory chain Complex I (NADH dehydrogenase), which transfers electrons from NADH to ubiquinone in cellular energy production. Mutations cause mitochondrial complex I deficiency, typically presenting as a multisystem disorder affecting high-energy demanding organs including the brain, heart, and skeletal muscle with autosomal recessive inheritance. This gene is extremely intolerant to loss-of-function variants, indicating that even single functional copies are insufficient for normal cellular function.

Summary from RefSeq, UniProt
Research Assistant →
0
Active trials
2
Pubs (1 yr)
93
P/LP submissions
0%
P/LP missense
1.87
LOEUF
DN
Mechanism· predicted
Clinical SummaryNDUFV3
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.
📋
ClinVar Variants
87 unique Pathogenic / Likely Pathogenic· 89 VUS of 207 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.87LOEUF
pLI 0.000
Z-score -1.50
OE 1.40 (1.001.87)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
-0.31Z-score
OE missense 1.05 (0.951.17)
270 obs / 256.0 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios
LoF OE1.40 (1.001.87)
00.351.4
Missense OE1.05 (0.951.17)
00.61.4
Synonymous OE1.06
01.21.6
LoF obs/exp: 23 / 16.4Missense obs/exp: 270 / 256.0Syn Z: -0.49
DN
0.6357th %ile
GOF
0.4972th %ile
LOF
0.3745th %ile

The highest-scoring mechanism for this gene is dominant-negative.

DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

207 submitted variants in ClinVar

Classification Summary

Pathogenic84
Likely Pathogenic3
VUS89
Likely Benign20
Benign3
Conflicting2
84
Pathogenic
3
Likely Pathogenic
89
VUS
20
Likely Benign
3
Benign
2
Conflicting

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
0
0
84
0
84
Likely Pathogenic
0
0
3
0
3
VUS
0
77
12
0
89
Likely Benign
0
10
4
6
20
Benign
0
0
1
2
3
Conflicting
2
Total0871048201

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

NDUFV3 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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