NDUFAF1

Chr 15AR

NADH:ubiquinone oxidoreductase complex assembly factor 1

Also known as: CGI-65, CGI65, CIA30, MC1DN11

The protein is a complex I assembly factor required for proper assembly of mitochondrial complex I (NADH-ubiquinone oxidoreductase), which catalyzes electron transfer from NADH to coenzyme Q in the respiratory chain. Mutations cause mitochondrial complex I deficiency through an autosomal recessive inheritance pattern. The pathogenic mechanism involves disrupted complex I assembly leading to impaired mitochondrial respiratory function.

OMIMResearchSummary from RefSeq, OMIM, UniProt, Mechanism
DNmechanismARLOEUF 0.911 OMIM phenotype
Clinical SummaryNDUFAF1
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Gene-Disease Validity (ClinGen)
mitochondrial disease · ARModerate

Moderate evidence — consider for supplementary testing

Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
0.91LOEUF
pLI 0.004
Z-score 1.82
OE 0.46 (0.250.91)
Tolerant

Typical tolerance to LoF variation

Missense Constraint
-0.44Z-score
OE missense 1.09 (0.971.23)
198 obs / 181.3 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios
LoF OE0.46 (0.250.91)
00.351.4
Missense OE1.09 (0.971.23)
00.61.4
Synonymous OE0.84
01.21.6
LoF obs/exp: 6 / 13.1Missense obs/exp: 198 / 181.3Syn Z: 1.04
DN
0.6355th %ile
GOF
0.3689th %ile
LOF
0.2582th %ile

The highest-scoring mechanism for this gene is dominant-negative.

DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

NDUFAF1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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Full-Text Mentions
NLP-detected gene mentions in article bodies · via PubTator3
PubTator3
Top 5 full-text resultsSearch PubTator3 ↗