NDN

Chr 15

necdin, MAGE family member

Also known as: HsT16328, PWCR

This intronless gene is located in the Prader-Willi syndrome deletion region. It is an imprinted gene and is expressed exclusively from the paternal allele. Studies in mouse suggest that the protein encoded by this gene may suppress growth in postmitotic neurons. [provided by RefSeq, Jul 2008]

OMIMResearchGenerating clinical summary…

Clinical highlights

Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Based on population constraint only.
1
Active trials
41
Pubs (1 yr)
P/LP submissions
P/LP missense
0.60
LOEUF
Mechanism

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint?
0.60LOEUF
pLI 0.675
Z-score 2.28
OE 0.13 (0.040.60)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
0.71Z-score
OE missense 0.86 (0.760.97)
167 obs / 194.8 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.13 (0.040.60)
00.351.4
Missense OE?0.86 (0.760.97)
00.61.4
Synonymous OE?1.14
01.21.6
LoF obs/exp: 1 / 7.9Missense obs/exp: 167 / 194.8Syn Z: -1.06

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

NDN · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.