NDE1

Chr 16AR

nudE neurodevelopment protein 1

Also known as: HOM-TES-87, LIS4, MHAC, NDE, NUDE, NUDE1

This gene encodes a member of the nuclear distribution E (NudE) family of proteins. The encoded protein is localized at the centrosome and interacts with other centrosome components as part of a multiprotein complex that regulates dynein function. This protein plays an essential role in microtubule organization, mitosis and neuronal migration. Mutations in this gene cause lissencephaly 4, a disorder characterized by lissencephaly, severe brain atrophy, microcephaly, and severe cognitive disability. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Mar 2012]

OMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Lissencephaly 4 (with microcephaly)MIM #614019
AR
MicrohydranencephalyMIM #605013
AR
UniProtLissencephaly 4 with microcephaly

Clinical highlights

Gene-disease validity (ClinGen)
microcephaly with lissencephaly and/or hydranencephaly · ARDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
19
Pubs (1 yr)
P/LP submissions
P/LP missense
0.69
LOEUF
LOF
Mechanism· G2P

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.69LOEUF
pLI 0.007
Z-score 2.56
OE 0.37 (0.210.69)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
-1.13Z-score
OE missense 1.22 (1.101.36)
246 obs / 200.8 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios?
LoF OE?0.37 (0.210.69)
00.351.4
Missense OE?1.22 (1.101.36)
00.61.4
Synonymous OE?1.19
01.21.6
LoF obs/exp: 7 / 19.1Missense obs/exp: 246 / 200.8Syn Z: -1.35

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

NDE1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →