NCAPH

Chr 2AR

non-SMC condensin I complex subunit H

Also known as: BRRN1, CAP-H, CAPH, MCPH23, NCAPH1

This gene encodes a member of the barr gene family and a regulatory subunit of the condensin complex. This complex is required for the conversion of interphase chromatin into condensed chromosomes. The protein encoded by this gene is associated with mitotic chromosomes, except during the early phase of chromosome condensation. During interphase, the protein has a distinct punctate nucleolar localization. Alternatively spliced transcript variants encoding different proteins have been described. [provided by RefSeq, Jul 2013]

OMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

?Microcephaly 23, primary, autosomal recessiveMIM #617985
AR

Clinical highlights

Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
23
Pubs (1 yr)
P/LP submissions
P/LP missense
0.57
LOEUF
LOF
Mechanism· G2P

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint?
0.57LOEUF
pLI 0.000
Z-score 3.61
OE 0.37 (0.240.57)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
1.09Z-score
OE missense 0.85 (0.780.93)
353 obs / 415.7 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.37 (0.240.57)
00.351.4
Missense OE?0.85 (0.780.93)
00.61.4
Synonymous OE?0.89
01.21.6
LoF obs/exp: 14 / 38.1Missense obs/exp: 353 / 415.7Syn Z: 1.05

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

NCAPH · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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