NAA60

Chr 16

N-alpha-acetyltransferase 60, NatF catalytic subunit

Also known as: HAT4, IBGC9, NAT15, NatF, hNaa60

This gene encodes an enzyme that localizes to the Golgi apparatus, where it transfers an acetyl group to the N-terminus of free proteins. This enzyme acts on histones, and its activity is important for chromatin assembly and chromosome integrity. Alternative splicing and the use of alternative promoters results in multiple transcript variants. The upstream promoter is located in a differentially methylated region (DMR) and undergoes imprinting; transcript variants originating from this position are expressed from the maternal allele. [provided by RefSeq, Nov 2015]

GeneReviewsResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

UniProtBasal ganglia calcification, idiopathic, 9, autosomal recessive

Clinical highlights

Interpreting a novel variant
This gene is strongly intolerant of loss-of-function variation in the population, so LoF variants warrant close attention. No curated mechanism annotation is available — see the mechanism card for the computational prediction and its caveats.Based on population constraint only.
0
Active trials
Pubs (1 yr)
P/LP submissions
P/LP missense
0.60
LOEUF
DN
Mechanism· predicted
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GeneReview available — NAA60
Authoritative clinical overview · Recommended first read
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Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint?
0.60LOEUF
pLI 0.517
Z-score 2.44
OE 0.19 (0.080.60)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint?
0.93Z-score
OE missense 0.78 (0.670.91)
111 obs / 142.2 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.19 (0.080.60)
00.351.4
Missense OE?0.78 (0.670.91)
00.61.4
Synonymous OE?0.99
01.21.6
LoF obs/exp: 2 / 10.6Missense obs/exp: 111 / 142.2Syn Z: 0.06

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

NAA60 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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