MYO9A

Chr 15AR

myosin IXA

Also known as: CMS24

This gene encodes an unconventional myosin that functions as an actin-based motor protein with ATPase activity and regulates neurite branching and motor neuron axon guidance. Mutations cause congenital myasthenic syndrome type 24 (presynaptic form), inherited in an autosomal recessive pattern. The gene shows significant constraint against loss-of-function variants (LOEUF 0.304), indicating intolerance to such changes.

GeneReviewsOMIMResearchSummary from RefSeq, OMIM, UniProt
ARLOEUF 0.301 OMIM phenotype
Clinical SummaryMYO9A
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Gene-Disease Validity (ClinGen)
arthrogryposis syndrome · ARLimited

Limited evidence — not for standalone diagnostic reporting

Population Constraint (gnomAD)
Constrained for loss-of-function variants (OE-LoF 0.22) despite low pLI — interpret in context.
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ClinVar Variants
17 unique Pathogenic / Likely Pathogenic· 281 VUS of 474 total submissions
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GeneReview available — MYO9A
Authoritative clinical overview · Recommended first read
Open GeneReview ↗

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

LoF intolerant — likely haploinsufficient
LoF Constraint
0.30LOEUF
pLI 0.489
Z-score 8.31
OE 0.22 (0.170.30)
Highly constrained

Highly LoF-intolerant (top ~10% of genes)

Missense Constraint
1.74Z-score
OE missense 0.87 (0.820.91)
1156 obs / 1334.9 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.22 (0.170.30)
00.351.4
Missense OE0.87 (0.820.91)
00.61.4
Synonymous OE1.01
01.21.6
LoF obs/exp: 30 / 133.7Missense obs/exp: 1156 / 1334.9Syn Z: -0.23

ClinVar Variant Classifications

474 submitted variants in ClinVar

Classification Summary

Pathogenic13
Likely Pathogenic4
VUS281
Likely Benign52
Benign72
Conflicting9
13
Pathogenic
4
Likely Pathogenic
281
VUS
52
Likely Benign
72
Benign
9
Conflicting

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
0
0
13
0
13
Likely Pathogenic
2
0
2
0
4
VUS
1
272
4
4
281
Likely Benign
1
19
4
28
52
Benign
0
12
51
9
72
Conflicting
9
Total43037441431

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

MYO9A · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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