MTIF3

Chr 13

mitochondrial translational initiation factor 3

Also known as: IF3mt

This gene encodes a translation initiation factor that binds to the 28S ribosomal subunit and regulates the equilibrium between assembled 55S ribosomes and their free subunits to facilitate mitochondrial protein synthesis initiation. Mutations cause Combined Oxidative Phosphorylation Deficiency 4, an autosomal recessive mitochondrial disorder with infantile onset characterized by severe neurodegeneration and cardiomyopathy. The gene is extremely intolerant to loss-of-function variants, reflecting its critical role in mitochondrial function.

OMIMResearchSummary from RefSeq, UniProt
DNmechanismLOEUF 1.61
Clinical SummaryMTIF3
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.61LOEUF
pLI 0.000
Z-score 0.10
OE 0.97 (0.591.61)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
0.35Z-score
OE missense 0.92 (0.791.06)
130 obs / 141.8 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.97 (0.591.61)
00.351.4
Missense OE0.92 (0.791.06)
00.61.4
Synonymous OE1.00
01.21.6
LoF obs/exp: 10 / 10.3Missense obs/exp: 130 / 141.8Syn Z: 0.00
DN
0.74top 25%
GOF
0.3094th %ile
LOF
0.2485th %ile

The highest-scoring mechanism for this gene is dominant-negative.

DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

MTIF3 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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Full-Text Mentions
NLP-detected gene mentions in article bodies · via PubTator3
PubTator3
Top 5 full-text resultsSearch PubTator3 ↗