MRPS16

Chr 10AR

mitochondrial ribosomal protein S16

Also known as: CGI-132, COXPD2, MRP-S16, RPMS16, S16mt, bS16m

The protein is a component of the mitochondrial ribosome's small 28S subunit and is essential for mitochondrial protein synthesis. Mutations cause combined oxidative phosphorylation deficiency, which presents with multisystem dysfunction affecting tissues with high energy demands through impaired mitochondrial respiratory chain function. The condition follows autosomal recessive inheritance and results from loss of protein function.

Summary from RefSeq, OMIM, UniProt, Mechanism
Research Assistant →

Primary Disease Associations & Inheritance

Combined oxidative phosphorylation deficiency 2MIM #610498
AR
Combined oxidative phosphorylation deficiency 59MIM #620646
AR
Combined oxidative phosphorylation deficiency 2MIM #610498
AR
0
Active trials
7
Pubs (1 yr)
0
P/LP submissions
P/LP missense
1.59
LOEUF
DN
Mechanism· predicted
Clinical SummaryMRPS16
🧬
Gene-Disease Validity (ClinGen)
mitochondrial disease · ARLimited

Limited evidence — not for standalone diagnostic reporting

Population Constraint (gnomAD)
Low constraint (pLI 0.06) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.59LOEUF
pLI 0.058
Z-score 0.79
OE 0.55 (0.221.59)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
-0.55Z-score
OE missense 1.17 (0.991.39)
94 obs / 80.1 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios
LoF OE0.55 (0.221.59)
00.351.4
Missense OE1.17 (0.991.39)
00.61.4
Synonymous OE1.43
01.21.6
LoF obs/exp: 2 / 3.6Missense obs/exp: 94 / 80.1Syn Z: -1.82
DN
0.6938th %ile
GOF
0.5367th %ile
LOF
0.3067th %ile

The highest-scoring mechanism for this gene is dominant-negative.

DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

MRPS16 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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Key Publications
Landmark & review papers · by relevance
PubMed
Top 2 results · since 2015Search PubMed ↗
Recent Gene-Specific Literature
Gene in title · MEDLINE · newest first
Europe PMC