MMP16

Chr 8

matrix metallopeptidase 16

Also known as: C8orf57, MMP-X2, MT-MMP2, MT-MMP3, MT3-MMP

The protein is a membrane-bound endopeptidase that degrades extracellular matrix components including collagen type III and fibronectin, and activates progelatinase A for vascular matrix remodeling. This gene is highly constrained against loss-of-function variants, but no definitive disease associations have been established in the current datasets. The inheritance pattern for potential disease-causing variants would be autosomal.

Summary from RefSeq, UniProt
Research Assistant →
0
Active trials
17
Pubs (1 yr)
34
P/LP submissions
0%
P/LP missense
0.35
LOEUF
Mechanism
Clinical SummaryMMP16
Population Constraint (gnomAD)
Highly constrained gene — heterozygous loss-of-function variants are very rare in the population (pLI 0.92). One damaged copy is likely sufficient to cause disease.
📋
ClinVar Variants
34 unique Pathogenic / Likely Pathogenic· 55 VUS of 105 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Dual constrained — LoF & missense intolerant
LoF Constraint
0.35LOEUF
pLI 0.918
Z-score 4.24
OE 0.17 (0.090.35)
Highly constrained

Highly LoF-intolerant (top ~10% of genes)

Missense Constraint
3.52Z-score
OE missense 0.47 (0.410.53)
163 obs / 347.7 exp
Constrained

Highly missense-constrained (top ~0.1%)

Observed / Expected Ratios
LoF OE0.17 (0.090.35)
00.351.4
Missense OE0.47 (0.410.53)
00.61.4
Synonymous OE0.94
01.21.6
LoF obs/exp: 5 / 30.1Missense obs/exp: 163 / 347.7Syn Z: 0.54

ClinVar Variant Classifications

105 submitted variants in ClinVar

Classification Summary

Pathogenic34
VUS55
Likely Benign1
Benign3
34
Pathogenic
55
VUS
1
Likely Benign
3
Benign

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
0
0
34
0
34
Likely Pathogenic
0
0
0
0
0
VUS
0
43
12
0
55
Likely Benign
0
0
1
0
1
Benign
0
0
1
2
3
Total04348293

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

MMP16 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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