MKS1

Chr 17AR

MKS transition zone complex subunit 1

The protein localizes to the basal body and transition zone of primary cilia, where it forms part of the tectonic-like complex that regulates ciliary structure and prevents diffusion of transmembrane proteins between cilia and plasma membranes. Mutations cause autosomal recessive ciliopathies including Meckel syndrome (typically lethal with occipital encephalocele, cystic kidneys, and polydactyly), Bardet-Biedl syndrome (characterized by retinal dystrophy, obesity, polydactyly, and intellectual disability), and Joubert syndrome (featuring cerebellar vermis hypoplasia and developmental delay). This gene is not highly constrained against loss-of-function variants.

OMIMResearchSummary from RefSeq, OMIM, UniProt
LOFmechanismARLOEUF 1.044 OMIM phenotypes
Clinical SummaryMKS1
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Gene-Disease Validity (ClinGen)
ciliopathy · ARDefinitive

Definitive — sufficient evidence for diagnostic panels

Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.
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Clinical Trials
5 active or recruiting trials — potential therapeutic options may be available
Some data sources returned errors (1)

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Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.04LOEUF
pLI 0.000
Z-score 1.35
OE 0.76 (0.571.04)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
0.49Z-score
OE missense 0.92 (0.841.02)
296 obs / 320.8 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.76 (0.571.04)
00.351.4
Missense OE0.92 (0.841.02)
00.61.4
Synonymous OE0.99
01.21.6
LoF obs/exp: 29 / 37.9Missense obs/exp: 296 / 320.8Syn Z: 0.06

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

MKS1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold
Clinical Literature
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