MIS12

Chr 17

MIS12 kinetochore complex component

Also known as: 2510025F08Rik, KNTC2AP, MTW1, hMis12

The MIS12 protein is essential for proper kinetochore formation and chromosome alignment during cell division, ensuring accurate chromosome segregation by facilitating spindle microtubule attachments to kinetochores. Mutations in MIS12 cause Mosaic variegated aneuploidy syndrome 4, an autosomal recessive disorder characterized by growth retardation, intellectual disability, microcephaly, and increased cancer risk due to chromosomal instability. This condition typically presents in early childhood with developmental delays and distinctive facial features.

OMIMResearchSummary from RefSeq, UniProt
DNmechanismLOEUF 1.07
Clinical SummaryMIS12
Population Constraint (gnomAD)
Constrained for loss-of-function variants (OE-LoF 0.34) despite low pLI — interpret in context.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
1.07LOEUF
pLI 0.147
Z-score 1.48
OE 0.34 (0.141.07)
Tolerant

Highly tolerant — LoF variants common in population

Missense Constraint
0.64Z-score
OE missense 0.83 (0.700.98)
90 obs / 108.9 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.34 (0.141.07)
00.351.4
Missense OE0.83 (0.700.98)
00.61.4
Synonymous OE1.30
01.21.6
LoF obs/exp: 2 / 5.9Missense obs/exp: 90 / 108.9Syn Z: -1.54
DN
0.6648th %ile
GOF
0.5661th %ile
LOF
0.3162th %ile

The highest-scoring mechanism for this gene is dominant-negative.

DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

MIS12 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
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Full-Text Mentions
NLP-detected gene mentions in article bodies · via PubTator3
PubTator3
Top 5 full-text resultsSearch PubTator3 ↗