MGME1

Chr 20AR

mitochondrial genome maintenance exonuclease 1

Also known as: C20orf72, DDK1, MTDPS11, bA504H3.4

The protein is a nuclear-encoded mitochondrial RecB-type exonuclease that cleaves single-stranded DNA and is necessary for maintaining mitochondrial genome synthesis. Mutations cause mitochondrial DNA depletion syndrome-11, inherited in an autosomal recessive pattern. The pathogenic mechanism involves dominant-negative effects disrupting mitochondrial DNA maintenance.

OMIMResearchSummary from RefSeq, OMIM, UniProt, Mechanism
DNmechanismARLOEUF 0.841 OMIM phenotype
Clinical SummaryMGME1
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Gene-Disease Validity (ClinGen)
mitochondrial disease · ARDefinitive

Definitive — sufficient evidence for diagnostic panels

Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
0.84LOEUF
pLI 0.002
Z-score 2.03
OE 0.45 (0.250.84)
Tolerant

Typical tolerance to LoF variation

Missense Constraint
-0.26Z-score
OE missense 1.05 (0.941.19)
187 obs / 177.3 exp
Tolerant

Tolerant to missense variation

Observed / Expected Ratios
LoF OE0.45 (0.250.84)
00.351.4
Missense OE1.05 (0.941.19)
00.61.4
Synonymous OE0.89
01.21.6
LoF obs/exp: 7 / 15.6Missense obs/exp: 187 / 177.3Syn Z: 0.67
DN
0.6938th %ile
GOF
0.4480th %ile
LOF
0.3260th %ile

The highest-scoring mechanism for this gene is dominant-negative.

DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

MGME1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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