MFSD11

Chr 17

major facilitator superfamily domain containing 11

Also known as: ET

The protein is predicted to be located in cellular membranes but its specific function remains unknown. Mutations in MFSD11 have not been definitively associated with any human disease, though the gene shows some intolerance to loss-of-function variants. The predicted mechanism of pathogenicity is dominant-negative, but clinical significance has not been established.

Summary from RefSeq, Mechanism
0
Active trials
1
Pubs (1 yr)
18
P/LP submissions
19%
P/LP missense
0.86
LOEUF
DN
Mechanism· predicted
Clinical SummaryMFSD11
Population Constraint (gnomAD)
Low constraint (pLI 0.00) — loss-of-function variants are relatively tolerated in the population.
📋
ClinVar Variants
16 unique Pathogenic / Likely Pathogenic· 73 VUS of 117 total submissions

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
0.86LOEUF
pLI 0.000
Z-score 2.08
OE 0.53 (0.340.86)
Tolerant

Typical tolerance to LoF variation

Missense Constraint
1.10Z-score
OE missense 0.80 (0.710.90)
198 obs / 246.5 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.53 (0.340.86)
00.351.4
Missense OE0.80 (0.710.90)
00.61.4
Synonymous OE1.15
01.21.6
LoF obs/exp: 12 / 22.7Missense obs/exp: 198 / 246.5Syn Z: -1.08
DN
0.6938th %ile
GOF
0.5857th %ile
LOF
0.2485th %ile

The highest-scoring mechanism for this gene is dominant-negative.

DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

117 submitted variants in ClinVar

Classification Summary

Pathogenic14
Likely Pathogenic2
VUS73
Likely Benign4
Benign1
14
Pathogenic
2
Likely Pathogenic
73
VUS
4
Likely Benign
1
Benign

Curated Variants Distribution

Classified variants from ClinVar · 5 ACMG categories

ClassificationLoFMissense + InframeNon-codingSynonymousTotal
Pathogenic
0
2
12
0
14
Likely Pathogenic
0
1
1
0
2
VUS
0
70
3
0
73
Likely Benign
0
1
2
1
4
Benign
0
0
0
1
1
Total07418294

LoF = frameshift, stop gained/lost, canonical splice · Counts from ClinVar esearch · Updated hourly

View in ClinVar →

Protein Context — Lollipop Plot

MFSD11 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
Open Research Assistant →
Key Publications
Landmark & review papers · by relevance
PubMed
Top 1 results · since 2015Search PubMed ↗