MED4

Chr 13

mediator complex subunit 4

Also known as: ARC36, DRIP36, HSPC126, TRAP36, VDRIP

The protein is a component of the Mediator complex that functions as a coactivator and scaffold for RNA polymerase II transcription, facilitating communication between gene-specific regulatory proteins and the basal transcription machinery. Mutations cause neurodevelopmental disorders with intellectual disability, developmental delay, and behavioral abnormalities, following an autosomal dominant inheritance pattern. This gene is not highly constrained against loss-of-function variants, suggesting the associated phenotypes may arise through other molecular mechanisms.

OMIMResearchSummary from RefSeq, UniProt
DNmechanismLOEUF 0.79
Clinical SummaryMED4
Population Constraint (gnomAD)
Low constraint (pLI 0.01) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
0.79LOEUF
pLI 0.008
Z-score 2.16
OE 0.40 (0.220.79)
Tolerant

Typical tolerance to LoF variation

Missense Constraint
1.02Z-score
OE missense 0.76 (0.640.89)
104 obs / 137.5 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.40 (0.220.79)
00.351.4
Missense OE0.76 (0.640.89)
00.61.4
Synonymous OE1.20
01.21.6
LoF obs/exp: 6 / 15.0Missense obs/exp: 104 / 137.5Syn Z: -1.10
DN
0.7132th %ile
GOF
0.5661th %ile
LOF
0.3647th %ile

The highest-scoring mechanism for this gene is dominant-negative.

DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

MED4 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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Clinical Literature
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