MCOLN1

Chr 19ADAR

mucolipin TRP cation channel 1

Also known as: LECD, MG-2, ML1, ML4, MLIV, MST080, MSTP080, TRP-ML1

This gene encodes a memberof the transient receptor potential (TRP) cation channel gene family. The transmembrane protein localizes to intracellular vesicular membranes including lysosomes, and functions in the late endocytic pathway and in the regulation of lysosomal exocytosis. The channel is permeable to Ca(2+), Fe(2+), Na(+), K(+), and H(+), and is modulated by changes in Ca(2+) concentration. Mutations in this gene result in mucolipidosis type IV. [provided by RefSeq, Oct 2009]

GeneReviewsOMIMResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

Lisch epithelial corneal dystrophyMIM #620763
AD
Mucolipidosis IVMIM #252650
AR
UniProtMucolipidosis 4
UniProtCorneal dystrophy, Lisch epithelial

Clinical highlights

Gene-disease validity (ClinGen)
mucolipidosis type IV · ARDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
2
Active trials
33
Pubs (1 yr)
P/LP submissions
P/LP missense
0.60
LOEUF
LOF
Mechanism· G2P
📖
GeneReview available — MCOLN1
Authoritative clinical overview · Recommended first read
Open GeneReview ↗

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.60LOEUF
pLI 0.001
Z-score 3.23
OE 0.37 (0.230.60)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
1.61Z-score
OE missense 0.76 (0.690.84)
272 obs / 357.9 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.37 (0.230.60)
00.351.4
Missense OE?0.76 (0.690.84)
00.61.4
Synonymous OE?1.15
01.21.6
LoF obs/exp: 11 / 30.1Missense obs/exp: 272 / 357.9Syn Z: -1.52

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

MCOLN1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.