MBTPS2

Chr X

membrane bound transcription factor peptidase, site 2

Also known as: BRESEK, IFAP, KFSD, KFSDX, OI19, OLMSX, S2P

This gene encodes a intramembrane zinc metalloprotease, which is essential in development. This protease functions in the signal protein activation involved in sterol control of transcription and the ER stress response. Mutations in this gene have been associated with ichthyosis follicularis with atrichia and photophobia (IFAP syndrome); IFAP syndrome has been quantitatively linked to a reduction in cholesterol homeostasis and ER stress response.[provided by RefSeq, Aug 2009]

ResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

UniProtIFAP syndrome 1, with or without Bresheck syndrome
UniProtOlmsted syndrome, X-linked
UniProtKeratosis follicularis spinulosa decalvans X-linked
UniProtOsteogenesis imperfecta 19

Clinical highlights

Gene-disease validity (ClinGen)
IFAP syndrome 1, with or without BRESHECK syndrome · XLDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype) and the gene is intolerant of it in the population — truncating, frameshift and canonical splice variants carry more prior weight here than missense.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
Pubs (1 yr)
P/LP submissions
P/LP missense
0.17
LOEUF· LoF intol.
LOF
Mechanism· G2P
Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

LoF intolerant — likely haploinsufficient
LoF Constraint?
0.17LOEUF
pLI 0.998
Z-score 3.89
OE 0.00 (0.000.17)
Highly constrained

Highly LoF-intolerant (top ~10% of genes)

Missense Constraint?
2.09Z-score
OE missense 0.58 (0.490.68)
112 obs / 194.0 exp
Mild constraint

Moderately missense-constrained (top ~2.5%)

Observed / Expected Ratios?
LoF OE?0.00 (0.000.17)
00.351.4
Missense OE?0.58 (0.490.68)
00.61.4
Synonymous OE?0.98
01.21.6
LoF obs/exp: 0 / 17.6Missense obs/exp: 112 / 194.0Syn Z: 0.14

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

MBTPS2 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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