MAT1A

Chr 10

methionine adenosyltransferase 1A

Also known as: MAT, MATA1, SAMS, SAMS1

This gene catalyzes a two-step reaction that involves the transfer of the adenosyl moiety of ATP to methionine to form S-adenosylmethionine and tripolyphosphate, which is subsequently cleaved to PPi and Pi. S-adenosylmethionine is the source of methyl groups for most biological methylations. The encoded protein is found as a homotetramer (MAT I) or a homodimer (MAT III) whereas a third form, MAT II (gamma), is encoded by the MAT2A gene. Mutations in this gene are associated with methionine adenosyltransferase deficiency. [provided by RefSeq, Jul 2008]

GeneReviewsResearchGenerating clinical summary…

Primary Disease Associations & Inheritance

UniProtMethionine adenosyltransferase deficiency

Clinical highlights

Gene-disease validity (ClinGen)
methionine adenosyltransferase deficiency · ARDefinitivesufficient evidence for diagnostic panels
Interpreting a novel variant
Loss of function is the curated mechanism (Gene2Phenotype), though the gene is not strongly LoF-constrained in the population — weigh truncating variants against that tolerance.Curated gene-level mechanism — a prior for triage, not a per-variant call.
0
Active trials
25
Pubs (1 yr)
P/LP submissions
P/LP missense
0.81
LOEUF
LOF
Mechanism· G2P
📖
GeneReview available — MAT1A
Authoritative clinical overview · Recommended first read
Open GeneReview ↗
Some data sources returned errors (1)

omim: Error: OMIM fetch failed: 429

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint?
0.81LOEUF
pLI 0.001
Z-score 2.16
OE 0.45 (0.260.81)
Tolerant

Typical tolerance to LoF variation

Missense Constraint?
1.65Z-score
OE missense 0.70 (0.610.79)
166 obs / 237.8 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios?
LoF OE?0.45 (0.260.81)
00.351.4
Missense OE?0.70 (0.610.79)
00.61.4
Synonymous OE?1.12
01.21.6
LoF obs/exp: 8 / 17.8Missense obs/exp: 166 / 237.8Syn Z: -0.91

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

MAT1A · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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