MARCHF1

Chr 4

membrane associated ring-CH-type finger 1

Also known as: MARCH-I, MARCH1, RNF171

MARCH1 is a member of the MARCH family of membrane-bound E3 ubiquitin ligases (EC 6.3.2.19). MARCH proteins add ubiquitin (see MIM 191339) to target lysines in substrate proteins, thereby signaling their vesicular transport between membrane compartments. MARCH1 downregulates the surface expression of major histocompatibility complex (MHC) class II molecules (see MIM 142880) and other glycoproteins by directing them to the late endosomal/lysosomal compartment (Bartee et al., 2004 [PubMed 14722266]; Thibodeau et al., 2008 [PubMed 18389477]; De Gassart et al., 2008 [PubMed 18305173]).[supplied by OMIM, Mar 2010]

0
Active trials
7
Pubs (1 yr)
0
P/LP submissions
P/LP missense
0.77
LOEUF
Multiple*
Mechanism· predicted
Clinical SummaryMARCHF1
Population Constraint (gnomAD)
Low constraint (pLI 0.01) — loss-of-function variants are relatively tolerated in the population.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
0.77LOEUF
pLI 0.009
Z-score 2.21
OE 0.39 (0.210.77)
Tolerant

Typical tolerance to LoF variation

Missense Constraint
1.41Z-score
OE missense 0.69 (0.590.81)
115 obs / 166.3 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.39 (0.210.77)
00.351.4
Missense OE0.69 (0.590.81)
00.61.4
Synonymous OE1.03
01.21.6
LoF obs/exp: 6 / 15.4Missense obs/exp: 115 / 166.3Syn Z: -0.20
DN
0.77top 25%
GOF
0.73top 25%
LOF
0.3843th %ile

This gene has evidence for multiple mechanisms of pathogenicity (dominant-negative and gain-of-function). Both the Badonyi & Marsh prediction and the broader genomic evidence point to dominant-negative as the predominant mechanism. Different variants in this gene may act through different mechanisms — interpret in context of the specific variant.

DNprediction above median
GOFprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

MARCHF1 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

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