MAP2K3

Chr 17

mitogen-activated protein kinase kinase 3

Also known as: MAPKK3, MEK3, MKK3, PRKMK3, SAPKK-2, SAPKK2

The encoded protein is a dual specificity kinase that phosphorylates threonine and tyrosine residues to activate p38-MAPK in response to cytokines and environmental stress. Gain-of-function mutations cause an unspecified neurological disorder with autosomal dominant inheritance. The pathogenic mechanism involves constitutive activation of the p38-MAPK signaling cascade.

OMIMResearchSummary from RefSeq, UniProt, Mechanism
MultiplemechanismLOEUF 0.66
Clinical SummaryMAP2K3
Population Constraint (gnomAD)
Constrained for loss-of-function variants (OE-LoF 0.34) despite low pLI — interpret in context.

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Tolerant — LoF & missense variants common in population
LoF Constraint
0.66LOEUF
pLI 0.022
Z-score 2.60
OE 0.34 (0.180.66)
Tolerant

Typical tolerance to LoF variation

Missense Constraint
1.80Z-score
OE missense 0.62 (0.530.73)
111 obs / 178.9 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.34 (0.180.66)
00.351.4
Missense OE0.62 (0.530.73)
00.61.4
Synonymous OE0.80
01.21.6
LoF obs/exp: 6 / 17.9Missense obs/exp: 111 / 178.9Syn Z: 1.31
DN
0.75top 25%
GOF
0.78top 25%
LOF
0.3067th %ile

This gene has evidence for multiple mechanisms of pathogenicity (gain-of-function and dominant-negative). Both the Badonyi & Marsh prediction and the broader genomic evidence point to gain-of-function as the predominant mechanism. Different variants in this gene may act through different mechanisms — interpret in context of the specific variant.

GOFprediction above median
DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

MAP2K3 · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold

Clinical Trials

Active and recruiting trials from ClinicalTrials.gov

No active trials found for this gene.

Search ClinicalTrials.gov →
Clinical Literature
Open Research Assistant →