MAG

Chr 19AR

myelin associated glycoprotein

Also known as: GMA, S-MAG, SIGLEC-4A, SIGLEC4, SIGLEC4A, SPG75

The myelin-associated glycoprotein (MAG) is an adhesion molecule that mediates interactions between myelinating cells and neurons, maintains normal axon myelination, and protects motor neurons against apoptosis. Mutations cause spastic paraplegia 75, an autosomal recessive disorder affecting the corticospinal tracts. The gene is highly constrained against loss-of-function variants (LOEUF 0.424), indicating that MAG function is essential for normal neurological development and maintenance.

OMIMResearchSummary from RefSeq, OMIM, UniProt
MultiplemechanismARLOEUF 0.421 OMIM phenotype
Clinical SummaryMAG
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Gene-Disease Validity (ClinGen)
complex hereditary spastic paraplegia · ARDefinitive

Definitive — sufficient evidence for diagnostic panels

Population Constraint (gnomAD)
Constrained for loss-of-function variants (OE-LoF 0.21) despite low pLI — interpret in context.
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Clinical Trials
1 active or recruiting trial — potential therapeutic options may be available

Population Genetics & Constraint

gnomAD v4 — loss-of-function & missense intolerance

Moderate LoF intolerance
LoF Constraint
0.42LOEUF
pLI 0.492
Z-score 3.84
OE 0.21 (0.120.42)
Moderately constrained

More LoF-intolerant than ~75% of genes

Missense Constraint
1.13Z-score
OE missense 0.84 (0.770.92)
348 obs / 412.9 exp
Tolerant

Mild missense constraint

Observed / Expected Ratios
LoF OE0.21 (0.120.42)
00.351.4
Missense OE0.84 (0.770.92)
00.61.4
Synonymous OE0.98
01.21.6
LoF obs/exp: 6 / 27.9Missense obs/exp: 348 / 412.9Syn Z: 0.18
DN
0.6455th %ile
GOF
0.6638th %ile
LOF
0.3746th %ile

This gene has evidence for multiple mechanisms of pathogenicity (gain-of-function and dominant-negative). Both the Badonyi & Marsh prediction and the broader genomic evidence point to gain-of-function as the predominant mechanism. Different variants in this gene may act through different mechanisms — interpret in context of the specific variant.

GOFprediction above median
DNprediction above median

Note: In-silico variant effect predictors (SIFT, PolyPhen, REVEL, CADD) may underestimate pathogenicity of missense variants in genes with GOF or DN mechanisms. Consider functional evidence and clinical context.

Predictions from Badonyi M, Marsh JA. PLoS ONE. 2024;19(8):e0307312.

ClinVar Variant Classifications

0 submitted variants in ClinVar

Protein Context — Lollipop Plot

MAG · protein map & ClinVar variants

Showing all ClinVar variants across the protein. Search a specific variant to highlight its position.

3D Protein StructureAlphaFold
Clinical Literature
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Full-Text Mentions
NLP-detected gene mentions in article bodies · via PubTator3
PubTator3
Top 5 full-text resultsSearch PubTator3 ↗